I agree with CNS that I don't think he meant he doesn't like crying in general, even though I'd likely have similar thoughts if my T said something like that. When a child is crying, especially a baby or toddler, it can be difficult to know how to get them to stop (even if they're your own!). You can't reason with a 2-year-old. And they're often wailing and screaming as part of the crying. An adult is different, even if your inner 2-year-old is coming out.

I do think it's something to ask him about though. You don't want to have it in the back of your mind that he's bothered any time you cry.